PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 28147.m000025
Common NameLOC8278136, RCOM_0173590
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family C2H2
Protein Properties Length: 155aa    MW: 17309.9 Da    PI: 9.1892
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
28147.m000025genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.69.9e-054769123
                   EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                   ++C++C + F ++  L  H++ H
  28147.m000025 47 FSCNYCQRKFYSSQALGGHQNAH 69
                   89******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.57E-64474No hitNo description
PROSITE profilePS5015711.0944774IPR007087Zinc finger, C2H2
PROSITE patternPS0002804969IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
MDFQPNTSLH LSLPNNNNSN QLNLELVLEP SSSSSSSPHS PAEPRVFSCN YCQRKFYSSQ  60
ALGGHQNAHK LERTLAKKSR ELSSAVRAHG GKSGSSSTSG LNHVRRNQPG FEHHGHGGRF  120
IDDMSYGRRD SWSMGYRPEN VQDEFNNQLD LSLRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002534087.11e-111PREDICTED: zinc finger protein 2
SwissprotQ392613e-36ZFP2_ARATH; Zinc finger protein 2
TrEMBLB9T7681e-111B9T768_RICCO; Zinc finger protein, putative
STRINGVIT_11s0052g01120.t014e-63(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF96192334
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57520.16e-25zinc finger protein 2